| SOLiD | Solexa | |
|---|---|---|
| Package |
rna_solid_pipeline.tar.gz (2.6 MB) [download] |
rna_solexa_pipeline.tar.gz (2.6 MB) [download] |
| Document |
rna_solid_pipeline.pdf [download] |
rna_solexa_pipeline.pdf [download] |
Test data
|
rna_solid_testdata.tar.gz (121 MB) [download] |
rna_solexa_testdata.tar.gz (67 MB) [download] |
| PBS required | yes | yes |
| Required software |
blastall [download] Corona Lite [download] |
blastall [download] Corona Lite [download] BWA [download] |
| Perl module |
Perl [download] GO model (24 KB) [download] SVG model (208 KB) [download] GD model (1.3 MB) [download] |
|
| R package |
R 2.10 [download] DEGseq [download] |
|
| References |
Genome Reference [FTP] Junction Reference [FTP]
|
|
| SOLiD | Solexa | |
|---|---|---|
| Package |
mirna_solid_pipeline.tar.gz (6.8 MB) [download] |
mirna_solexa_pipeline.tar.gz (7.0 MB) [download] |
| Document |
mirna_solid_pipeline.pdf [download] |
mirna_solexa_pipeline.pdf [download] |
|
Test data
|
mirna_solid_testdata.tar.gz (92 MB) [download] |
mirna_solexa_testdata.tar.gz (89 MB) [download] |
| PBS required | yes | yes |
| Required software |
Perl [download] MaToGff [download] Corona Lite [download] RNA_pipeline_0.5.0 [download] ViennaRNA [download] RNAhybrid [download] miRanda [download] |
Perl [download]
BWA [download]
ViennaRNA [download] Randfold [download] squid-1.9g [download] RNAhybrid [download] miRanda [download] |
| References |
Genome reference [FTP] |
|
Note:
♦ DO-NOT take the test data package for website testing, it only serves for the off-line analysis package.
♦ Test data for website uploading are listed in the upload pages.