Downloads
RNA Analysis packages
  SOLiD Solexa
Package

rna_solid_pipeline.tar.gz    (2.6 MB)     [download]

rna_solexa_pipeline.tar.gz    (2.6 MB)     [download]

Document

rna_solid_pipeline.pdf     [download]

rna_solexa_pipeline.pdf     [download]

Test data 

rna_solid_testdata.tar.gz    (121 MB)     [download]

rna_solexa_testdata.tar.gz    (67 MB)     [download]

PBS required yes yes
Required software

blastall [download]

Corona Lite [download]

blastall [download]

Corona Lite [download]

BWA [download]

Perl module

Perl [download]

GO model    (24 KB) [download]

SVG model    (208 KB) [download]

GD model    (1.3 MB) [download]

R package

R 2.10 [download]

DEGseq [download]

References

Genome Reference [FTP]

Junction Reference [FTP]

GO Reference [FTP] [website]

KEGG Reference [FTP] [website]

miRNA Analysis Packages
  SOLiD Solexa
Package

mirna_solid_pipeline.tar.gz    (6.8 MB)     [download]

mirna_solexa_pipeline.tar.gz    (7.0 MB)     [download]

Document

mirna_solid_pipeline.pdf     [download]

mirna_solexa_pipeline.pdf     [download]

Test data 

mirna_solid_testdata.tar.gz    (92 MB)     [download]

mirna_solexa_testdata.tar.gz    (89 MB)     [download]

PBS required yes yes
Required software

Perl [download]

MaToGff [download]

Corona Lite [download]

RNA_pipeline_0.5.0 [download]

ViennaRNA [download]

RNAhybrid [download]

miRanda [download]

Perl [download]

blastall [download]

BWA [download]

samtools [download]

ViennaRNA [download]

Randfold [download]

squid-1.9g [download]

RNAhybrid [download]

miRanda [download]

References

Genome reference [FTP]

 Note:
♦  DO-NOT take the test data package for website testing, it only serves for the off-line analysis package.
♦  Test data for website uploading are listed in the upload pages.
©BIG 2010, Beijing Institute of Genomics, Chinese Academy of Sciences
No.7 Beitucheng West Road, Chaoyang District, Beijing 100029, PR China