The job status bar demonstrates the status of a job in real time, including the status (waiting, running, finished, error) of each step, and the time it used.
Figure 1: A screen shot
of job status
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Quality distribution result shows the distribution of the raw reads, including base quality distribution and quality distribution.
Figure
2: A screen shot of filter result
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SOLiD mapping result
Figure 3: A screen shot of RNA SOLiD mapping result
Solexa mapping result
Figure 4: A screen shot
of solexa mapping result
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Figure 5: A screen shot of reads distribution in different genomic region
Figure 6: A screen shot of statistics of gene numbers for different reads abundance
Figure 7: A screen shot of statistics of gene numbers for different reads abundance based on RPKM range
Figure 8: A screen shot of expressed gene numbers and unique mapping tags in different gene types
Figure 9: A screen shot of detail information of gene annotation results
Note: the description of each column.
1, NM-Name: ENSEMBL Gene ID;
2, Chrom: Chromosome number;
3, G_Strand: Gene Strand;
4, GeneLen: Gene Length;
5, ExonLen: Exon Length;
6, G_Exp: Stat. of reads number that mapped to gene sequecnes in
chromosome;
7, Exon: Stat. of reads number that just mapped to exon
sequences which include exon reads in chromosome and junction
sequences;
8, Intron: Stat. reads number that just mapped to intron
sequences;
9, RPKM Value: calculated by formula:
((1e+9)*ExonReads)/(ExonLen*TotalUniqueMappedReads);
10, Function: Functional information.
The output results of GO program contain one figure and a gene list information. For example: Test data results provided as follows,
Figure 10:A screen shot of GO results(GO level:2)
GO result figure show the expression level of two sample data analyzed with different colors, including all the vocabularies of cellular component, biological process, and molecular function.
When you click the ˇ°Detailsˇ±, the detail information about GO statistics infromation was shown.
Figure 11: A screen shot of GO statistics information
Click the digit in the Gene Number cloumn,a gene list information table list all genes belong to a particular functional category.
Figure 12: A screen shot of GO gene information
The output results of KEGG program contain one figure and gene list information. For example: Test data results provided as follows,
One KEGG PATHWAY figure: Gene expression variation is indicated by color changes (From magenta to cyan).
Figure 13: A screen shot of the metabolic pathway
When you click the picture ,a table list including gene expression information would be showed.
Figure 14: A screen shot of a
KEGG PATHWAY detail gene list information
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